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  • Top cofit genes for GFF5774 from Variovorax sp. SCN45

    RNA polymerase sigma factor for flagellar operon
    SEED: RNA polymerase sigma factor for flagellar operon
    KEGG: RNA polymerase sigma factor for flagellar operon FliA

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7051 hypothetical protein 0.38 0.70
    2 GFF6693 Two-component transcriptional response regulator, LuxR family no 0.66
    3 GFF6390 GtrA-like protein no 0.61
    4 GFF5856 Outer membrane receptor proteins, likely involved in siderophore uptake 0.34 0.61
    5 GFF72 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) 0.58 0.60
    6 GFF6472 membrane efflux protein no 0.59
    7 GFF4766 identified by similarity to GB:AAK22812.1; match to protein family HMM PF06676 no 0.58
    8 GFF375 hypothetical protein 0.69 0.58
    9 GFF2817 Probable proline-rich protein no 0.57
    10 GFF6813 no description no 0.56
    11 GFF5761 Flagellar motor rotation protein MotA 0.97 0.56
    12 GFF2489 hypothetical protein no 0.56
    13 GFF5779 L-idonate 5-dehydrogenase (EC 1.1.1.264) no 0.56
    14 GFF312 FIG021862: membrane protein, exporter 0.52 0.56
    15 GFF318 Uncharacterized protein YjgR no 0.55
    16 GFF1641 Polyketide synthase modules and related proteins no 0.55
    17 GFF5185 FIG00732904: hypothetical protein no 0.54
    18 GFF6642 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.53
    19 GFF6208 Cytosine/purine/uracil/thiamine/allantoin permease family protein no 0.53
    20 GFF2958 hypothetical protein no 0.52

    Or look for negative cofitness