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  • Top cofit genes for GFF5703 from Variovorax sp. SCN45

    pyridoxal-phosphate dependent enzyme family protein
    SEED: Threonine dehydratase (EC 4.3.1.19)
    KEGG: threonine dehydratase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6089 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) no 0.60
    2 GFF412 Transcription-repair coupling factor no 0.60
    3 GFF6268 BUG/TctC family periplasmic protein no 0.57
    4 GFF4066 Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP) no 0.56
    5 GFF17 hypothetical protein no 0.53
    6 GFF202 Transcriptional regulator, LysR family no 0.52
    7 GFF5440 RNA polymerase ECF-type sigma factor no 0.52
    8 GFF34 Uncharacterized metal-dependent hydrolase YcfH no 0.51
    9 GFF5097 5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC 5.3.3.10) no 0.51
    10 GFF2418 BUG/TctC family periplasmic protein no 0.50
    11 GFF7159 Putative reductase no 0.50
    12 GFF2451 Cytosine/purine/uracil/thiamine/allantoin permease family protein no 0.49
    13 GFF941 Transporter, LysE family no 0.49
    14 GFF472 hypothetical protein no 0.49
    15 GFF7118 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) no 0.49
    16 GFF2324 Lactam utilization protein LamB no 0.48
    17 GFF2248 Transcriptional regulatory protein RtcR no 0.48
    18 GFF2970 BUG/TctC family periplasmic protein no 0.48
    19 GFF4915 hypothetical protein no 0.48
    20 GFF7126 KEGG: transposase no 0.47

    Or look for negative cofitness