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  • Top cofit genes for GFF57 from Variovorax sp. SCN45

    Putative polysaccharide export protein YccZ precursor
    SEED: Polysaccharide export lipoprotein Wza
    KEGG: polysaccharide export outer membrane protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3014 KEGG: type VI secretion system protein ImpF no 0.57
    2 GFF4183 hypothetical protein no 0.55
    3 GFF4427 hypothetical protein no 0.53
    4 GFF3904 Probable signal peptide protein no 0.51
    5 GFF3517 Potassium-transporting ATPase C chain (EC 3.6.3.12) (TC 3.A.3.7.1) 0.32 0.50
    6 GFF6368 T6SS lysozyme-like component TssE no 0.50
    7 GFF1886 Elongation factor G-like protein TM_1651 no 0.50
    8 GFF1336 ABC transporter, substrate-binding protein RSc1750 no 0.47
    9 GFF2899 no description no 0.47
    10 GFF6772 L-arabonate dehydratase (EC 4.2.1.25) no 0.47
    11 GFF3391 Chlorogenate esterase no 0.47
    12 GFF5760 Flagellar transcriptional activator FlhC 0.81 0.46
    13 GFF1587 no description no 0.46
    14 GFF3356 Probable transmembrane protein no 0.46
    15 GFF2585 no description no 0.45
    16 GFF4231 no description no 0.43
    17 GFF4229 Transcriptional regulator no 0.43
    18 GFF6259 Alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase subunit PhnI (EC 2.7.8.37) no 0.42
    19 GFF5314 Protein-methionine-sulfoxide reductase heme-binding subunit MsrQ 0.40 0.42
    20 GFF3466 FIG00932805: hypothetical protein no 0.42

    Or look for negative cofitness