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  • Top cofit genes for GFF5688 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF940 Permease of the drug/metabolite transporter (DMT) superfamily no 0.52
    2 GFF4096 no description no 0.50
    3 GFF5978 Nucleoside 2-deoxyribosyltransferase no 0.49
    4 GFF4586 no description no 0.48
    5 GFF1247 Sulfate and thiosulfate binding protein CysP no 0.47
    6 GFF3186 FIG01046500: hypothetical protein no 0.47
    7 GFF1267 Probable lipoprotein signal peptide no 0.46
    8 GFF3940 putative membrane protein no 0.46
    9 GFF763 Transporter, LysE family 0.66 0.46
    10 GFF7109 BUG/TctC family periplasmic protein no 0.45
    11 GFF1646 Acyl-homoserine lactone acylase PvdQ (EC 3.5.1.-), quorum-quenching no 0.44
    12 GFF3505 hypothetical protein no 0.44
    13 GFF4188 Signal peptidase I (EC 3.4.21.89) no 0.43
    14 GFF541 Ser-tRNA(Ala) deacylase; Gly-tRNA(Ala) deacylase no 0.43
    15 GFF1872 no description no 0.42
    16 GFF2096 Acyl-CoA dehydrogenase family protein no 0.42
    17 GFF3214 FIG138928: iron-regulated membrane protein no 0.42
    18 GFF2024 L-lysine permease no 0.42
    19 GFF2900 Subtilisin-like serine proteases no 0.41
    20 GFF1783 Fe(2+)/alpha-ketoglutarate-dependent dioxygenase LpxO no 0.41

    Or look for negative cofitness