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  • Top cofit genes for GFF5667 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7184 hypothetical protein no 0.65
    2 GFF4608 3-hydroxyacyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.1.1.35) / Enoyl-CoA hydratase [fadN-fadA-fadE operon] (EC 4.2.1.17) no 0.64
    3 GFF532 no description no 0.61
    4 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) no 0.60
    5 GFF1890 3-carboxy-cis,cis-muconate cycloisomerase (EC 5.5.1.2) no 0.60
    6 GFF7222 Coenzyme F390 synthetase no 0.59
    7 GFF5965 hypothetical protein no 0.58
    8 GFF6884 FIG00932717: hypothetical protein no 0.58
    9 GFF1515 Flagellar hook-length control protein FliK no 0.58
    10 GFF3090 Colicin V production protein no 0.56
    11 GFF1665 Nicotinamidase/isochorismatase family protein no 0.55
    12 GFF265 RND efflux system, membrane fusion protein no 0.55
    13 GFF4145 transcriptional regulators-like protein no 0.55
    14 GFF7102 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase (EC 1.2.1.60) 0.20 0.55
    15 GFF6444 no description no 0.54
    16 GFF6192 Amidase family protein Atu4441 no 0.54
    17 GFF7289 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9) no 0.54
    18 GFF2357 DNA repair protein RecN no 0.54
    19 GFF1846 Nucleoside ABC transporter, permease protein 2 no 0.54
    20 GFF6287 no description no 0.54

    Or look for negative cofitness