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  • Top cofit genes for GFF563 from Variovorax sp. SCN45

    Type IV fimbrial biogenesis protein PilY1
    SEED: Type IV fimbrial biogenesis protein PilY1

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6390 GtrA-like protein no 0.57
    2 GFF3935 RNA polymerase ECF-type sigma factor no 0.55
    3 GFF4399 hypothetical protein no 0.52
    4 GFF5021 Tripartite tricarboxylate transporter TctA family no 0.50
    5 GFF1265 cAMP-binding protein no 0.49
    6 GFF4426 Homolog of eukaryotic DNA ligase III no 0.49
    7 GFF2531 Transcriptional regulator, AsnC family no 0.49
    8 GFF492 no description no 0.49
    9 GFF2827 Bacterioferritin (EC 1.16.3.1) no 0.49
    10 GFF5855 T1SS secreted agglutinin RTX no 0.48
    11 GFF72 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.48
    12 GFF6564 hypothetical protein no 0.47
    13 GFF3850 Periplasmic serine proteases (ClpP class) no 0.46
    14 GFF6462 Integral membrane protein no 0.46
    15 GFF2566 AsmA no 0.46
    16 GFF3906 Acyl-CoA dehydrogenase no 0.46
    17 GFF974 hypothetical protein no 0.46
    18 GFF2830 Uncharacterized protein CC_3061 no 0.46
    19 GFF5026 Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) no 0.46
    20 GFF3938 Intracellular protease no 0.46

    Or look for negative cofitness