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  • Top cofit genes for GFF5620 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5396 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.61
    2 GFF476 InterPro IPR005134 COGs COG2862 no 0.60
    3 GFF866 no description no 0.60
    4 GFF3085 no description no 0.60
    5 GFF5254 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.59
    6 GFF2449 Beta-ureidopropionase (EC 3.5.1.6) 0.16 0.56
    7 GFF3747 putative esterase no 0.56
    8 GFF1172 hypothetical protein no 0.56
    9 GFF6276 Uncharacterized MFS-type transporter no 0.55
    10 GFF2799 Molybdopterin-guanine dinucleotide biosynthesis protein MobB no 0.55
    11 GFF7317 RND efflux system, inner membrane transporter no 0.53
    12 GFF5965 hypothetical protein no 0.53
    13 GFF6475 hypothetical protein no 0.52
    14 GFF812 Putative reductase no 0.51
    15 GFF73 Probable haloacid dehalogenase no 0.51
    16 GFF5756 KEGG: flagellar protein FliT no 0.51
    17 GFF1219 SAM-dependent methyltransferase no 0.50
    18 GFF4200 Acyl-CoA dehydrogenase, long-chain specific (EC 1.3.8.8) no 0.50
    19 GFF3487 InterPro IPR005806 COGs COG2146 no 0.50
    20 GFF619 Aspartate carbamoyltransferase (EC 2.1.3.2) no 0.50

    Or look for negative cofitness