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  • Top cofit genes for GFF5612 from Variovorax sp. SCN45

    Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16)
    SEED: Aldehyde dehydrogenase (EC 1.2.1.3)
    KEGG: succinate-semialdehyde dehydrogenase (NADP+)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7288 Dipeptide ABC transporter, substrate-binding protein DppA (TC 3.A.1.5.2) no 0.54
    2 GFF7167 Pirin no 0.52
    3 GFF4649 Iron-chelator utilization protein 0.15 0.52
    4 GFF543 Uncharacterized deacetylase PA5390 no 0.52
    5 GFF2064 Anhydro-N-acetylmuramic acid kinase (EC 2.7.1.170) 0.54 0.50
    6 GFF1519 TRAP-type C4-dicarboxylate transport system, periplasmic component no 0.50
    7 GFF5094 BUG/TctC family periplasmic protein no 0.48
    8 GFF4332 Aldehyde dehydrogenase (EC 1.2.1.3) 0.52 0.45
    9 GFF4241 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.45
    10 GFF2864 no description no 0.45
    11 GFF3904 Probable signal peptide protein no 0.44
    12 GFF6391 RfbJ protein no 0.44
    13 GFF1073 Glutathione S-transferase (EC 2.5.1.18) no 0.43
    14 GFF5913 T6SS outer membrane component TssL (ImpK/VasF) / unknown domain no 0.43
    15 GFF3396 Benzoate ABC transporter, permease protein 1 no 0.42
    16 GFF1380 Peptidase M48, Ste24p no 0.42
    17 GFF80 no description no 0.42
    18 GFF925 hypothetical protein no 0.42
    19 GFF4170 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.41
    20 GFF2738 hypothetical protein no 0.41

    Or look for negative cofitness