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  • Top cofit genes for GFF5611 from Variovorax sp. SCN45

    BUG/TctC family periplasmic protein
    SEED: Tricarboxylate transport protein TctC

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF1470 Putative transposase InsK for insertion sequence element IS150 no 0.62
    2 GFF3864 Sigma factor RpoE negative regulatory protein RseA no 0.61
    3 GFF4309 Branched-chain amino acid ABC transporter, ATP-binding protein LivF (TC 3.A.1.4.1) no 0.60
    4 GFF1954 no description no 0.55
    5 GFF706 hypothetical protein no 0.55
    6 GFF5099 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (EC 4.1.2.52) no 0.55
    7 GFF6591 Transcriptional regulator, GntR family no 0.55
    8 GFF588 putative membrane protein no 0.54
    9 GFF5027 Aldehyde dehydrogenase B (EC 1.2.1.22) no 0.54
    10 GFF1211 D-aminopeptidase (EC 3.4.11.19) no 0.53
    11 GFF4614 Transcriptional regulator, AraC family no 0.53
    12 GFF7163 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) no 0.52
    13 GFF5809 Outer membrane factor (OMF) lipoprotein associated wth MdtABC efflux system no 0.52
    14 GFF5221 Phosphonoacetaldehyde hydrolase (EC 3.11.1.1) no 0.51
    15 GFF3052 Allophanate hydrolase 2 subunit 2 (EC 3.5.1.54) no 0.51
    16 GFF4662 no description no 0.50
    17 GFF834 hypothetical protein no 0.50
    18 GFF6527 Transcriptional regulator, AcrR family no 0.50
    19 GFF6114 ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) no 0.50
    20 GFF1690 KEGG: DNA-binding protein H-NS no 0.49

    Or look for negative cofitness