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  • Top cofit genes for GFF5583 from Variovorax sp. SCN45

    Transcriptional regulator PA0181, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5579 probable bifunctional hydroxylase/oxidoreductase no 0.61
    2 GFF1866 Dihydropyrimidinase (EC 3.5.2.2) @ D-hydantoinase (EC 3.5.2.2) no 0.54
    3 GFF5937 T6SS component TssG (ImpH/VasB) no 0.54
    4 GFF3032 Two-component transcriptional response regulator, LuxR family no 0.54
    5 GFF5245 FIG00771430: hypothetical protein no 0.53
    6 GFF5515 Lysophospholipase (EC 3.1.1.5) no 0.51
    7 GFF6098 ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) 0.35 0.51
    8 GFF3740 Transcriptional regulator, MerR family no 0.51
    9 GFF4199 Nitrilotriacetate monooxygenase component B (EC 1.14.13.-) no 0.50
    10 GFF2406 DipZ protein no 0.50
    11 GFF2614 no description no 0.50
    12 GFF5542 no description no 0.50
    13 GFF1449 Predicted pyridoxine biosynthesis protein (probably from glycolaldehide) 0.20 0.50
    14 GFF6206 Transcriptional regulator, GntR family no 0.50
    15 GFF5161 Glutathione S-transferase (EC 2.5.1.18) no 0.50
    16 GFF4693 hypothetical protein no 0.50
    17 GFF5235 General secretion pathway protein D / Type II secretion outermembrane pore forming protein (PulD) 0.25 0.49
    18 GFF4375 FIG00463055: hypothetical protein no 0.48
    19 GFF1976 Transcriptional regulator, AcrR family no 0.48
    20 GFF6407 Phytanoyl-CoA dioxygenase no 0.48

    Or look for negative cofitness