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Cofit
Protein
Homologs
Top cofit genes for GFF5531 from
Variovorax sp. SCN45
hypothetical protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF3743
Twitching motility protein PilT
no
0.65
2
GFF6075
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
no
0.62
3
GFF984
Protein phosphatase 2C-like
no
0.62
4
GFF3038
hypothetical protein
no
0.61
5
GFF6290
RNA polymerase sigma-54 factor RpoN
no
0.61
6
GFF2519
FIG016425: Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
no
0.60
7
GFF5414
hypothetical protein
no
0.60
8
GFF2155
Signal transduction histidine kinase CheA
no
0.60
9
GFF4089
Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4)
no
0.60
10
GFF5415
Type IV fimbrial biogenesis protein PilV
no
0.59
11
GFF5321
Type IV pilus biogenesis protein PilO
no
0.59
12
GFF2508
Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-)
no
0.59
13
GFF5128
hypothetical protein
no
0.59
14
GFF2153
type IV pili signal transduction protein PilI
no
0.59
15
GFF2510
Type IV fimbrial assembly, ATPase PilB
no
0.58
16
GFF5418
Type IV fimbrial biogenesis protein PilY1
no
0.58
17
GFF2154
twitching motility protein PilJ
no
0.57
18
GFF33
Type IV pilus biogenesis protein PilZ
no
0.57
19
GFF5320
Type IV pilus biogenesis protein PilN
no
0.57
20
GFF2509
Type IV fimbrial assembly protein PilC
no
0.57
Or look for
negative cofitness