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  • Top cofit genes for GFF5502 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Chromosome initiation inhibitor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF379 Ribonuclease HII (EC 3.1.26.4) no 0.56
    2 GFF4546 Permease of the drug/metabolite transporter (DMT) superfamily no 0.54
    3 GFF4858 Transposase no 0.54
    4 GFF10 Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein, CzcB family no 0.54
    5 GFF419 hypothetical protein no 0.53
    6 GFF1926 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.52
    7 GFF1177 Serine protease 0.55 0.51
    8 GFF5922 T6SS forkhead associated domain protein ImpI/VasC no 0.51
    9 GFF5299 TonB-dependent receptor no 0.50
    10 GFF4705 Monooxygenase, flavin-binding family no 0.50
    11 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.50
    12 GFF3710 Lactoylglutathione lyase and related lyases no 0.49
    13 GFF3074 Putative polysaccharide deacetylase no 0.49
    14 GFF4253 hypothetical protein no 0.49
    15 GFF4928 hypothetical protein no 0.49
    16 GFF1533 no description no 0.48
    17 GFF6937 Membrane protein no 0.48
    18 GFF1976 Transcriptional regulator, AcrR family no 0.48
    19 GFF1318 hypothetical protein no 0.48
    20 GFF5927 3-oxoacyl-[ACP] synthase no 0.48

    Or look for negative cofitness