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  • Top cofit genes for GFF5495 from Variovorax sp. SCN45

    Putative transmembrane protein
    SEED: Probable transmembrane protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5761 Flagellar motor rotation protein MotA no 0.54
    2 GFF7051 hypothetical protein no 0.54
    3 GFF526 Tricarboxylate transport transcriptional regulator TctD no 0.54
    4 GFF6566 hypothetical protein no 0.54
    5 GFF2941 S-(hydroxymethyl)glutathione dehydrogenase (EC 1.1.1.284) 0.35 0.54
    6 GFF5510 protein of unknown function DUF306, Meta and HslJ no 0.54
    7 GFF994 Cytoskeleton protein RodZ no 0.53
    8 GFF7299 MotA/TolQ/ExbB proton channel family protein no 0.52
    9 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.51
    10 GFF5774 RNA polymerase sigma factor for flagellar operon no 0.51
    11 GFF5268 protein of unknown function DUF805 no 0.50
    12 GFF72 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.50
    13 GFF312 FIG021862: membrane protein, exporter no 0.49
    14 GFF1397 TRAP-type C4-dicarboxylate transport system, large permease component no 0.48
    15 GFF3456 Possible regulatory protein similar to urea ABC transporter, substrate binding protein no 0.47
    16 GFF6856 DipZ protein no 0.47
    17 GFF5991 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.46
    18 GFF2002 Thioredoxin related protein PA2694 no 0.46
    19 GFF3452 hypothetical protein no 0.46
    20 GFF5668 Uncharacterized MFS-type transporter no 0.46

    Or look for negative cofitness