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  • Top cofit genes for GFF5489 from Variovorax sp. SCN45

    Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
    SEED: Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake
    KEGG: DNA processing protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7058 Zinc-binding GTPase YciC 0.54 0.55
    2 GFF3231 hypothetical protein no 0.55
    3 GFF7093 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-) no 0.54
    4 GFF6086 Putative short-chain dehydrogenase no 0.52
    5 GFF1577 hypothetical protein no 0.50
    6 GFF921 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) 0.56 0.50
    7 GFF6220 hypothetical protein no 0.50
    8 GFF1391 Uncharacterized MFS-type transporter no 0.50
    9 GFF5123 no description no 0.50
    10 GFF2947 3'-5' exonuclease no 0.48
    11 GFF3676 Outer membrane protein romA no 0.48
    12 GFF925 hypothetical protein no 0.47
    13 GFF5511 FIG000875: Thioredoxin domain-containing protein EC-YbbN no 0.47
    14 GFF2811 Transcriptional regulator, YafY family 0.41 0.47
    15 GFF6255 Alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase (EC 3.6.1.63) no 0.47
    16 GFF2117 KEGG: type IV fimbrial biogenesis protein FimT no 0.46
    17 GFF1063 dioxygenase, TauD/TfdA family no 0.46
    18 GFF5094 BUG/TctC family periplasmic protein no 0.46
    19 GFF4171 hypothetical protein no 0.46
    20 GFF6823 BUG/TctC family periplasmic protein no 0.46

    Or look for negative cofitness