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  • Top cofit genes for GFF5476 from Variovorax sp. SCN45

    ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
    SEED: Amino acid ABC transporter, permease protein
    KEGG: polar amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3423 Adenylate cyclase (EC 4.6.1.1) no 0.56
    2 GFF6717 hypothetical protein no 0.52
    3 GFF5828 Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) no 0.51
    4 GFF4888 Mlr6156 protein no 0.50
    5 GFF4061 Multicopper oxidase no 0.49
    6 GFF2032 Excinuclease ABC subunit A, dimeric form no 0.49
    7 GFF2009 Dienelactone hydrolase and related enzymes no 0.49
    8 GFF3090 Colicin V production protein no 0.48
    9 GFF5080 DNA recombination-dependent growth factor RdgC 0.23 0.48
    10 GFF1576 2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57) no 0.47
    11 GFF4962 Multidrug resistance transporter, Bcr/CflA family no 0.47
    12 GFF6399 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), N-terminal domain no 0.47
    13 GFF3007 hypothetical protein no 0.46
    14 GFF5832 MoaF protein precursor no 0.45
    15 GFF1404 hypothetical protein no 0.45
    16 GFF4855 Electron transfer flavoprotein, beta subunit no 0.45
    17 GFF3389 Glycosyl transferases, related to UDP-glucuronosyltransferase no 0.45
    18 GFF3249 Guanyl-specific ribonuclease (EC 3.1.27.3) no 0.44
    19 GFF4094 no description no 0.44
    20 GFF218 hypothetical protein no 0.44

    Or look for negative cofitness