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  • Top cofit genes for GFF5460 from Variovorax sp. SCN45

    3-oxo-tetronate 4-phosphate decarboxylase
    SEED: Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5663 ABC transporter, fused permease protein 0.36 0.46
    2 GFF4720 Putrescine transport system permease protein potI no 0.46
    3 GFF6156 Aerobic carbon monoxide dehydrogenase (quinone), medium chain (EC 1.2.5.3) no 0.43
    4 GFF4642 no description no 0.43
    5 GFF259 Bis-ABC ATPase YheS no 0.43
    6 GFF4987 3-fumarylpyruvate hydrolase (EC 3.7.1.20) no 0.43
    7 GFF6508 hypothetical protein no 0.43
    8 GFF4399 hypothetical protein no 0.42
    9 GFF4394 FIG00613342: Bacterial patatin-like phospholipase domain containing protein 0.28 0.42
    10 GFF4947 Erythritol kinase EryA (EC 2.7.1.27) no 0.42
    11 GFF5755 Flagellar biosynthesis protein FliS no 0.42
    12 GFF7165 Adenylate cyclase (EC 4.6.1.1) no 0.42
    13 GFF6650 no description no 0.42
    14 GFF456 Transcriptional regulator, AraC family no 0.41
    15 GFF6986 hypothetical protein no 0.41
    16 GFF3708 ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) / ABC transporter, ATP-binding protein (cluster 11, riboflavin/purine nucleoside/unknown) no 0.41
    17 GFF7290 Putative transmembrane protein no 0.41
    18 GFF2200 sigma-54-dependent transcriptional regulator no 0.41
    19 GFF5982 Transcriptional regulator, AcrR family no 0.40
    20 GFF5177 hypothetical protein no 0.40

    Or look for negative cofitness