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  • Top cofit genes for GFF5454 from Variovorax sp. SCN45

    Transcriptional regulator, AsnC family
    SEED: Transcriptional regulator, AsnC family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4804 tRNA threonylcarbamoyladenosine biosynthesis protein TsaE no 0.65
    2 GFF1637 Polyketide synthase modules and related proteins no 0.58
    3 GFF6216 hypothetical protein no 0.57
    4 GFF4058 Copper/silver efflux RND transporter, outer membrane protein CusC no 0.55
    5 GFF7157 Peptidase M20D, amidohydrolase no 0.53
    6 GFF2947 3'-5' exonuclease no 0.53
    7 GFF3402 no description no 0.51
    8 GFF4950 ABC transporter, permease protein (cluster 2, ribose/xylose/arabinose/galactose) no 0.51
    9 GFF4994 Acyl-CoA-binding protein no 0.51
    10 GFF5987 Response regulator BaeR no 0.48
    11 GFF4074 Multicopper oxidase 0.36 0.48
    12 GFF3432 L-carnitine dehydratase/bile acid-inducible protein F 0.38 0.48
    13 GFF4068 Heavy metal sensor histidine kinase no 0.48
    14 GFF4270 Transcriptional regulator, AcrR family 0.47 0.48
    15 GFF7334 Nucleoside-diphosphate-sugar epimerases no 0.48
    16 GFF2828 Uncharacterized protein CC_3059 no 0.48
    17 GFF4255 no description 0.41 0.47
    18 GFF1516 TRAP-type C4-dicarboxylate transport system, large permease component no 0.47
    19 GFF2225 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.47
    20 GFF4457 Monofunctional biosynthetic peptidoglycan transglycosylase no 0.46

    Or look for negative cofitness