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  • Top cofit genes for PS417_27690 from Pseudomonas simiae WCS417

    XRE family transcriptional regulator
    SEED: Putrescine utilization regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_00895 succinate-semialdehyde dehydrogenase 0.64 0.31
    2 PS417_23730 LysR family transcriptional regulator 0.21 0.29
    3 PS417_00900 4-aminobutyrate aminotransferase 0.74 0.28
    4 PS417_20580 isocitrate dehydrogenase no 0.28
    5 PS417_12665 hypothetical protein 0.23 0.27
    6 PS417_21275 GntR family transcriptional regulator 0.72 0.24
    7 PS417_13835 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) 0.18 0.24
    8 PS417_17560 Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (from data) 0.16 0.23
    9 PS417_23690 Anthranilate 1,2-dioxygenase (deaminating, decarboxylating) (EC 1.14.12.1) (from data) 0.60 0.23
    10 PS417_08155 integration host factor subunit beta 0.60 0.22
    11 PS417_01180 ribosomal protein S6 modification protein 0.30 0.22
    12 PS417_25705 lipoate--protein ligase no 0.22
    13 PS417_19805 flagellar M-ring protein FliF 0.36 0.21
    14 PS417_01570 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase no 0.20
    15 PS417_14610 lysine transporter LysE no 0.20
    16 PS417_14165 ArsR family transcriptional regulator no 0.20
    17 PS417_27835 endoribonuclease 0.63 0.20
    18 PS417_05595 ornithine carbamoyltransferase 0.67 0.20
    19 PS417_17795 ABC transporter permease no 0.20
    20 PS417_21065 3-methylitaconate isomerase 0.27 0.20

    Or look for negative cofitness