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  • Top cofit genes for GFF5394 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3371 FIG00456413: hypothetical protein no 0.66
    2 GFF3511 no description no 0.66
    3 GFF2210 Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly no 0.64
    4 GFF3970 Ring hydroxylating dioxygenase, alpha subunit (EC 1.14.12.13) no 0.57
    5 GFF5185 FIG00732904: hypothetical protein no 0.57
    6 GFF6665 Autolysin sensor kinase (EC 2.7.3.-) no 0.56
    7 GFF1833 (S)-mandelate dehydrogenase (EC 1.1.99.31) no 0.55
    8 GFF4509 no description no 0.55
    9 GFF6639 no description no 0.53
    10 GFF2114 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type 0.22 0.53
    11 GFF1963 Transcriptional regulator, AsnC family no 0.53
    12 GFF1330 UPF0061 protein YdiU no 0.53
    13 GFF6270 Uncharacterized MFS-type transporter no 0.53
    14 GFF5057 Peptidoglycan D,D-transpeptidase MrdA (EC 3.4.16.4) no 0.52
    15 GFF2335 Lactoylglutathione lyase and related lyases no 0.52
    16 GFF2182 Inner membrane component of TAM transport system no 0.52
    17 GFF6725 Tellurite resistance protein no 0.52
    18 GFF35 FOG: Ankyrin repeat no 0.51
    19 GFF1760 Probable transmembrane protein no 0.51
    20 GFF112 ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) no 0.51

    Or look for negative cofitness