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  • Top cofit genes for GFF5381 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Transcriptional regulator, LysR family

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF976 no description no 0.54
    2 GFF5303 Tricarboxylate transport transcriptional regulator TctD no 0.50
    3 GFF491 no description no 0.50
    4 GFF6286 Probable signal peptide protein no 0.50
    5 GFF3634 hypothetical protein no 0.48
    6 GFF4840 FIG00956188: hypothetical protein no 0.47
    7 GFF156 Glycosyl transferase, group 2 family no 0.47
    8 GFF6543 Transcriptional regulator, LysR family no 0.46
    9 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.46
    10 GFF5259 Na+/solute symporter no 0.46
    11 GFF564 hypothetical protein no 0.46
    12 GFF4715 Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase) no 0.46
    13 GFF162 hypothetical protein no 0.46
    14 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR no 0.45
    15 GFF2308 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, thiol-disulfide reductase involved in Cu(I) insertion into CoxII Cu(A) center no 0.45
    16 GFF2537 Glycerol-3-phosphate ABC transporter, substrate-binding protein UgpB no 0.45
    17 GFF6078 no description no 0.45
    18 GFF5947 Large extracellular alpha-helical protein no 0.45
    19 GFF6675 ortholog of Bordetella pertussis (BX470248) BP3300 no 0.44
    20 GFF331 Nucleoside ABC transporter, permease protein 2 no 0.44

    Or look for negative cofitness