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  • Top cofit genes for PS417_27505 from Pseudomonas simiae WCS417

    transcriptional regulator
    SEED: Regulator of sigma D
    KEGG: regulator of sigma D

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_06365 RNA polymerase sigma factor 0.88 0.55
    2 PS417_16370 chemotaxis protein CheY 0.68 0.54
    3 PS417_10720 chemotaxis protein CheY 0.58 0.52
    4 PS417_16160 ABC transporter substrate-binding protein no 0.50
    5 PS417_28265 pyridoxamine kinase 0.51 0.49
    6 PS417_12550 chemotaxis protein no 0.45
    7 PS417_22710 TonB-dependent receptor 0.55 0.45
    8 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.82 0.44
    9 PS417_20955 secretion protein no 0.44
    10 PS417_13425 cupin no 0.42
    11 PS417_05975 chemotaxis protein CheW 0.33 0.42
    12 PS417_21040 sulfurylase no 0.42
    13 PS417_24595 histidine kinase 0.33 0.42
    14 PS417_21050 serine acetyltransferase no 0.41
    15 PS417_21375 ADP-ribosylglycohydrolase 0.55 0.41
    16 PS417_16070 TonB-dependent receptor no 0.40
    17 PS417_06970 LysR family transcriptional regulator no 0.40
    18 PS417_24885 transcriptional regulator no 0.39
    19 PS417_19560 amino acid ABC transporter substrate-binding protein 0.49 0.39
    20 PS417_18310 hypothetical protein 0.55 0.39

    Or look for negative cofitness