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Cofit
Protein
Homologs
Top cofit genes for GFF5357 from
Sphingobium sp. HT1-2
Phage integrase
SEED: Phage integrase family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF4301
hypothetical protein
no
0.70
2
GFF605
Putative ligase protein
no
0.70
3
GFF5258
hypothetical protein
no
0.70
4
GFF2275
ATP-DEPENDENT PROTEASE SUBUNIT
no
0.68
5
GFF2295
hypothetical protein
no
0.67
6
GFF2657
Phosphate regulon transcriptional regulatory protein PhoB (SphR)
no
0.65
7
GFF3201
hypothetical protein
no
0.65
8
GFF916
hypothetical protein
no
0.65
9
GFF3400
L-lactate dehydrogenase
no
0.65
10
GFF242
Ribonuclease T2 family protein
no
0.64
11
GFF3080
hypothetical protein
no
0.64
12
GFF5232
Inner membrane transport permease YhhJ
no
0.63
13
GFF1776
hypothetical protein
no
0.63
14
GFF5159
IS66 Orf2 family protein
no
0.63
15
GFF517
Carboxypeptidase-related protein
no
0.63
16
GFF2715
sigma factor
no
0.62
17
GFF1811
Uncharacterized MFS-type transporter
no
0.62
18
GFF2294
Kynurenine formamidase, bacterial (EC 3.5.1.9)
no
0.61
19
GFF3331
FIG003437: hypothetical with DnaJ-like domain
no
0.61
20
GFF382
diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)
no
0.61
Or look for
negative cofitness