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  • Top cofit genes for GFF5313 from Variovorax sp. SCN45

    Protein-methionine-sulfoxide reductase catalytic subunit MsrP
    SEED: Putative sulfite oxidase subunit YedY

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6171 Na(+) H(+) antiporter subunit D no 0.55
    2 GFF3851 Uncharacterized MFS-type transporter no 0.54
    3 GFF3493 Transcriptional regulator, LysR family no 0.50
    4 GFF2985 BUG/TctC family periplasmic protein no 0.50
    5 GFF994 Cytoskeleton protein RodZ no 0.50
    6 GFF2752 FIG00974677: hypothetical protein no 0.49
    7 GFF3863 RNA polymerase sigma factor RpoE 0.52 0.47
    8 GFF5856 Outer membrane receptor proteins, likely involved in siderophore uptake no 0.47
    9 GFF4987 3-fumarylpyruvate hydrolase (EC 3.7.1.20) no 0.47
    10 GFF4375 FIG00463055: hypothetical protein no 0.47
    11 GFF6659 Multidrug efflux system MdtABC-TolC, inner-membrane proton/drug antiporter MdtB (RND type) 0.46 0.46
    12 GFF5020 Tripartite tricarboxylate transporter TctB family no 0.46
    13 GFF5442 Septum-associated rare lipoprotein A no 0.46
    14 GFF973 PQQ-dependent oxidoreductase, gdhB family 0.32 0.46
    15 GFF1313 Cellulose synthase operon protein C no 0.45
    16 GFF359 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) 0.32 0.45
    17 GFF4913 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) 0.41 0.45
    18 GFF7053 Transcriptional regulator, LysR family no 0.45
    19 GFF5287 FIG00455092: hypothetical protein no 0.45
    20 GFF5725 Methyl-accepting chemotaxis sensor/transducer protein no 0.45

    Or look for negative cofitness