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  • Top cofit genes for GFF5303 from Variovorax sp. SCN45

    Tricarboxylate transport transcriptional regulator TctD

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6201 Oxidoreductase, aldo/keto reductase family no 0.60
    2 GFF4376 UPF0380 proteins YafZ and homologs no 0.52
    3 GFF4718 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) no 0.52
    4 GFF5381 Transcriptional regulator, LysR family no 0.50
    5 GFF1858 ABC transporter, ATP-binding protein (cluster 3, basic aa/glutamine/opines) no 0.49
    6 GFF4906 hypothetical protein no 0.49
    7 GFF1777 Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily no 0.47
    8 GFF2775 Lignostilbene-alpha,beta-dioxygenase and related enzymes no 0.47
    9 GFF4427 hypothetical protein no 0.47
    10 GFF6543 Transcriptional regulator, LysR family no 0.46
    11 GFF326 Polysaccharide deacetylase, caspase activity no 0.46
    12 GFF5132 no description no 0.46
    13 GFF678 Error-prone repair homolog of DNA polymerase III alpha subunit (EC 2.7.7.7) 0.34 0.45
    14 GFF6711 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) no 0.44
    15 GFF7005 Flagellar biosynthesis protein FlhB no 0.44
    16 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) no 0.44
    17 GFF5434 FIG097052: Sugar transporter no 0.44
    18 GFF3314 FIG00349255: hypothetical protein no 0.44
    19 GFF6546 hypothetical protein no 0.43
    20 GFF2239 no description no 0.43

    Or look for negative cofitness