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  • Top cofit genes for GFF5284 from Variovorax sp. SCN45

    RNA polymerase ECF-type sigma factor
    SEED: FIG006045: Sigma factor, ECF subfamily
    KEGG: RNA polymerase sigma-70 factor, ECF subfamily

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5095 hypothetical protein no 0.49
    2 GFF6678 Putative inner membrane protein no 0.48
    3 GFF6927 Transcriptional regulator, ArsR family no 0.47
    4 GFF7361 Acyl-coenzyme A thioesterase PaaD (Pse.pu.) (E. coli PaaI) no 0.45
    5 GFF1665 Nicotinamidase/isochorismatase family protein no 0.44
    6 GFF4161 hypothetical protein no 0.44
    7 GFF4926 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) no 0.44
    8 GFF5293 N-carbamoyl-L-amino acid hydrolase (EC 3.5.1.87) no 0.43
    9 GFF1310 hypothetical protein no 0.42
    10 GFF884 BUG/TctC family periplasmic protein no 0.42
    11 GFF2309 DNA alkylation repair enzyme no 0.42
    12 GFF1872 no description no 0.41
    13 GFF6343 no description no 0.41
    14 GFF4607 Putative DNA methylase no 0.41
    15 GFF1318 hypothetical protein no 0.40
    16 GFF5341 Efflux ABC transporter, permease protein no 0.40
    17 GFF1977 L-asparaginase (EC 3.5.1.1) no 0.40
    18 GFF1208 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) no 0.39
    19 GFF4272 BUG/TctC family periplasmic protein no 0.39
    20 GFF5012 Citronellol dehydrogenase; Citronellal dehydrogenase no 0.39

    Or look for negative cofitness