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  • Top cofit genes for GFF526 from Variovorax sp. SCN45

    Tricarboxylate transport transcriptional regulator TctD
    SEED: Tricarboxylate transport transcriptional regulator TctD
    KEGG: two-component system, OmpR family, response regulator TctD

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3758 NAD-specific glutamate dehydrogenase (EC 1.4.1.2); NADP-specific glutamate dehydrogenase (EC 1.4.1.4) no 0.63
    2 GFF3788 putative secreted protein no 0.58
    3 GFF4955 hypothetical protein no 0.55
    4 GFF4483 ATP-dependent hsl protease ATP-binding subunit HslU no 0.55
    5 GFF5495 Putative transmembrane protein no 0.54
    6 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.53
    7 GFF7325 Glucans biosynthesis glucosyltransferase H no 0.52
    8 GFF2835 putative TonB-dependent receptor no 0.52
    9 GFF6049 Acyl-CoA dehydrogenase family protein no 0.52
    10 GFF535 Transcriptional regulator, AraC family no 0.51
    11 GFF5308 Epoxide hydrolase (EC 3.3.2.9) no 0.51
    12 GFF72 D-threo-3-hydroxyaspartate ammonia-lyase (EC 4.3.1.-) no 0.51
    13 GFF6152 hypothetical protein no 0.51
    14 GFF6750 hypothetical protein no 0.50
    15 GFF6337 Ser/Thr protein phosphatase family protein no 0.49
    16 GFF312 FIG021862: membrane protein, exporter no 0.49
    17 GFF6526 Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11) no 0.49
    18 GFF1742 hypothetical protein no 0.49
    19 GFF1007 Xanthine-guanine phosphoribosyltransferase (EC 2.4.2.22) no 0.49
    20 GFF6491 SAM-dependent methyltransferase no 0.49

    Or look for negative cofitness