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  • Top cofit genes for GFF5252 from Variovorax sp. SCN45

    ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide transport system permease protein DppB (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6172 Na(+) H(+) antiporter subunit C no 0.50
    2 GFF1331 Transcriptional regulator, AraC family no 0.50
    3 GFF5610 hypothetical protein no 0.49
    4 GFF4694 no description no 0.49
    5 GFF167 Two-component system sensor histidine kinase no 0.49
    6 GFF840 no description no 0.48
    7 GFF3211 no description no 0.48
    8 GFF220 tRNA pseudouridine(55) synthase (EC 5.4.99.25) no 0.48
    9 GFF4129 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.47
    10 GFF7217 hypothetical protein no 0.46
    11 GFF2651 Cytochrome d ubiquinol oxidase subunit X (EC 1.10.3.-) no 0.46
    12 GFF775 no description no 0.46
    13 GFF6148 hypothetical protein no 0.46
    14 GFF6337 Ser/Thr protein phosphatase family protein no 0.45
    15 GFF2089 CDP-alcohol phosphatidyltransferase family protein no 0.45
    16 GFF5341 Efflux ABC transporter, permease protein no 0.44
    17 GFF22 hypothetical protein no 0.44
    18 GFF3410 Transcriptional regulator, AraC family no 0.44
    19 GFF3994 hypothetical protein no 0.44
    20 GFF2527 GCN5-related N-acetyltransferase no 0.44

    Or look for negative cofitness