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  • Top cofit genes for GFF5208 from Variovorax sp. SCN45

    Efflux ABC transporter, permease/ATP-binding protein Reut_A2584
    SEED: Lipid A export ATP-binding/permease protein MsbA
    KEGG: ATP-binding cassette, subfamily B, bacterial

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2734 DNA topoisomerase IV subunit B (EC 5.99.1.3) no 0.87
    2 GFF3624 Putative transmembrane protein no 0.82
    3 GFF649 no description no 0.76
    4 GFF240 Cytosol aminopeptidase PepA (EC 3.4.11.1) no 0.74
    5 GFF2730 DNA topoisomerase IV subunit A (EC 5.99.1.3) no 0.71
    6 GFF6036 DNA translocase FtsK no 0.69
    7 GFF3621 Magnesium and cobalt transport protein CorA no 0.69
    8 GFF1119 Ribonuclease HI (EC 3.1.26.4) no 0.68
    9 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) no 0.68
    10 GFF2835 putative TonB-dependent receptor no 0.68
    11 GFF2836 MotA/TolQ/ExbB proton channel family protein no 0.67
    12 GFF5572 FIG00984604: hypothetical protein no 0.66
    13 GFF5209 DUF1854 domain-containing protein 0.97 0.65
    14 GFF1984 Phospholipid and glycerol acyltransferase (EC 2.3.1.51) 0.38 0.64
    15 GFF3625 Ferredoxin, 2Fe-2S 0.52 0.63
    16 GFF3619 no description no 0.63
    17 GFF3618 Transcriptional regulator, LysR family no 0.63
    18 GFF651 Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-) no 0.61
    19 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) no 0.59
    20 GFF489 ATP-dependent Clp protease proteolytic subunit ClpP (EC 3.4.21.92) no 0.59

    Or look for negative cofitness