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  • Top cofit genes for GFF5178 from Variovorax sp. SCN45

    Transcriptional regulator, Xre-family with cupin domain
    SEED: Transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6122 ABC-type antimicrobial peptide transport system, permease component no 0.64
    2 GFF2027 2-hydroxychromene-2-carboxylate isomerase family protein no 0.61
    3 GFF2575 Quinolinate synthetase (EC 2.5.1.72) 0.58 0.60
    4 GFF4530 MBL-fold metallo-hydrolase superfamily no 0.60
    5 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) no 0.59
    6 GFF5896 Anthranilate synthase, aminase component (EC 4.1.3.27) 0.44 0.59
    7 GFF2574 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) 0.55 0.59
    8 GFF808 Polyhydroxyalkanoic acid synthase 0.51 0.58
    9 GFF2446 FIG00956403: hypothetical protein no 0.57
    10 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.48 0.57
    11 GFF244 Cys regulon transcriptional activator CysB no 0.56
    12 GFF1503 Dihydrofolate reductase homolog no 0.56
    13 GFF4282 BUG/TctC family periplasmic protein no 0.56
    14 GFF2627 Chorismate synthase (EC 4.2.3.5) no 0.56
    15 GFF5158 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) no 0.55
    16 GFF3402 no description no 0.55
    17 GFF2356 RNase adapter protein RapZ no 0.54
    18 GFF943 Intracellular PHB depolymerase no 0.54
    19 GFF6110 N-acyl-D-amino-acid deacylase (EC 3.5.1.81) no 0.54
    20 GFF607 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.53

    Or look for negative cofitness