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  • Top cofit genes for PS417_26460 from Pseudomonas simiae WCS417

    NAD-dependent DNA ligase LigB
    SEED: DNA ligase (EC 6.5.1.2)
    KEGG: DNA ligase (NAD+)

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_18880 SAM-dependent methyltransferase no 0.20
    2 PS417_03135 acyl dehydratase 0.12 0.19
    3 PS417_18285 multidrug transporter 0.27 0.19
    4 PS417_00335 cytochrome B561 0.26 0.18
    5 PS417_19335 isochorismatase no 0.18
    6 PS417_21895 nuclease PIN 0.34 0.18
    7 PS417_26155 hypothetical protein no 0.17
    8 PS417_08355 glycosylase 0.29 0.17
    9 PS417_21070 aconitate hydratase no 0.17
    10 PS417_06850 methanol dehydrogenase no 0.16
    11 PS417_23725 methylmalonate-semialdehyde dehydrogenase no 0.16
    12 PS417_03515 type III secretion protein no 0.16
    13 PS417_21270 translation initiation factor 2 no 0.16
    14 PS417_21830 TetR family transcriptional regulator no 0.16
    15 PS417_12650 magnesium transporter no 0.16
    16 PS417_25780 molecular chaperone DnaJ 0.35 0.16
    17 PS417_27385 amino acid ABC transporter substrate-binding protein 0.25 0.15
    18 PS417_26510 5,10-methylenetetrahydrofolate reductase 0.38 0.15
    19 PS417_05060 PsiE family protein no 0.15
    20 PS417_10245 hypothetical protein no 0.15

    Or look for negative cofitness