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Cofit
Protein
Homologs
Top cofit genes for PS417_26410 from
Pseudomonas simiae WCS417
alginate lyase
SEED: Alginate lyase precursor (EC 4.2.2.3)
Rank
Hit
Name
Description
Conserved?
Cofitness
1
PS417
_12825
MFS transporter
no
0.42
2
PS417
_23950
polynucleotide phosphorylase/polyadenylase
no
0.41
3
PS417
_19145
membrane protein
0.52
0.41
4
PS417
_13425
cupin
no
0.40
5
PS417
_27665
diguanylate cyclase
0.66
0.38
6
PS417
_05985
chemotaxis protein CheY
0.60
0.36
7
PS417
_24605
thiamine-phosphate pyrophosphorylase
no
0.36
8
PS417
_21600
pilus assembly protein PilZ
0.47
0.35
9
PS417
_05975
chemotaxis protein CheW
no
0.35
10
PS417
_06365
RNA polymerase sigma factor
0.23
0.34
11
PS417
_22190
diguanylate cyclase
0.36
0.34
12
PS417
_21050
serine acetyltransferase
no
0.33
13
PS417
_02210
diguanylate cyclase
0.69
0.33
14
PS417
_12610
RNA polymerase sigma factor
no
0.33
15
PS417
_16070
TonB-dependent receptor
no
0.33
16
PS417
_12560
MFS transporter
0.18
0.31
17
PS417
_06970
LysR family transcriptional regulator
no
0.31
18
PS417
_21130
nitrate reductase
no
0.31
19
PS417
_03070
LuxR family transcriptional regulator
no
0.31
20
PS417
_27605
hypothetical protein
no
0.30
Or look for
negative cofitness