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  • Top cofit genes for PS417_26410 from Pseudomonas simiae WCS417

    alginate lyase
    SEED: Alginate lyase precursor (EC 4.2.2.3)

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_12825 MFS transporter no 0.42
    2 PS417_23950 polynucleotide phosphorylase/polyadenylase no 0.41
    3 PS417_19145 membrane protein 0.67 0.41
    4 PS417_13425 cupin no 0.40
    5 PS417_27665 diguanylate cyclase 0.66 0.38
    6 PS417_05985 chemotaxis protein CheY 0.60 0.36
    7 PS417_24605 thiamine-phosphate pyrophosphorylase no 0.36
    8 PS417_21600 pilus assembly protein PilZ 0.47 0.35
    9 PS417_05975 chemotaxis protein CheW no 0.35
    10 PS417_06365 RNA polymerase sigma factor 0.23 0.34
    11 PS417_22190 diguanylate cyclase 0.79 0.34
    12 PS417_21050 serine acetyltransferase no 0.33
    13 PS417_02210 diguanylate cyclase 0.69 0.33
    14 PS417_12610 RNA polymerase sigma factor no 0.33
    15 PS417_16070 TonB-dependent receptor no 0.33
    16 PS417_12560 MFS transporter 0.18 0.31
    17 PS417_06970 LysR family transcriptional regulator no 0.31
    18 PS417_21130 nitrate reductase no 0.31
    19 PS417_03070 LuxR family transcriptional regulator no 0.31
    20 PS417_27605 hypothetical protein no 0.30

    Or look for negative cofitness