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  • Top cofit genes for GFF5154 from Variovorax sp. SCN45

    DNA-binding transcriptional regulator, MocR family / aminotransferase domain
    SEED: Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1)

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5434 FIG097052: Sugar transporter no 0.60
    2 GFF6324 Kup system potassium uptake protein 0.35 0.59
    3 GFF4553 RNA chaperone ProQ no 0.59
    4 GFF1617 Phosphonate uptake and metabolism regulator, LysR-family no 0.57
    5 GFF6711 ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines) no 0.56
    6 GFF2936 3-dehydroquinate dehydratase II (EC 4.2.1.10) no 0.56
    7 GFF5288 Uncharacterized protein PA4513 no 0.56
    8 GFF2046 no description no 0.55
    9 GFF2538 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) no 0.53
    10 GFF3748 KEGG: dihydrodipicolinate synthase no 0.52
    11 GFF2537 Glycerol-3-phosphate ABC transporter, substrate-binding protein UgpB no 0.52
    12 GFF499 hypothetical protein no 0.52
    13 GFF1029 CHRD domain containing protein no 0.52
    14 GFF6070 Gamma-glutamyltranspeptidase (EC 2.3.2.2) @ Glutathione hydrolase (EC 3.4.19.13) 0.57 0.51
    15 GFF478 Rrf2-linked NADH-flavin reductase 0.49 0.51
    16 GFF4791 RNA polymerase ECF-type sigma factor no 0.50
    17 GFF7234 Cyclopropane-fatty-acyl-phospholipid synthase (EC 2.1.1.79) no 0.50
    18 GFF7206 no description no 0.50
    19 GFF2132 Thiol:disulfide interchange protein DsbC no 0.49
    20 GFF4747 Quinone oxidoreductase (EC 1.6.5.5) no 0.49

    Or look for negative cofitness