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  • Top cofit genes for GFF5122 from Variovorax sp. SCN45

    AAA+ ATPase superfamily protein YifB/ComM, associated with DNA recombination
    SEED: MG(2+) CHELATASE FAMILY PROTEIN / ComM-related protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF96 RNA polymerase ECF-type sigma factor no 0.62
    2 GFF6457 no description no 0.60
    3 GFF5004 N-acyl-L-amino acid amidohydrolase (EC 3.5.1.14) no 0.53
    4 GFF1832 TRAP transporter solute receptor, unknown substrate 3 no 0.53
    5 GFF4034 Cobalt/zinc/cadmium resistance protein CzcD no 0.52
    6 GFF3041 Outer membrane porin protein 32 precursor no 0.52
    7 GFF2706 VgrG protein no 0.51
    8 GFF3165 Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) no 0.50
    9 GFF6958 no description no 0.50
    10 GFF6323 Benzoate transport protein no 0.50
    11 GFF3590 2-dehydropantoate 2-reductase (EC 1.1.1.169) no 0.50
    12 GFF4824 Transcriptional regulator, AraC family no 0.49
    13 GFF5216 Metal dependent phosphohydrolase no 0.49
    14 GFF175 ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) no 0.48
    15 GFF23 no description no 0.47
    16 GFF5767 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) no 0.47
    17 GFF839 Retron-type RNA-directed DNA polymerase (EC 2.7.7.49) no 0.47
    18 GFF1935 GNAT family acetyltransferase PA5433 no 0.47
    19 GFF1752 Cysteine dioxygenase (EC 1.13.11.20) no 0.46
    20 GFF5997 hypothetical protein no 0.46

    Or look for negative cofitness