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  • Top cofit genes for GFF5117 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: Glycine cleavage system transcriptional activator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF7085 BUG/TctC family periplasmic protein no 0.60
    2 GFF795 5-methyltetrahydropteroyltriglutamate--homocystei ne methyltransferase (EC 2.1.1.14) 0.32 0.59
    3 GFF1232 Uncharacterized protein conserved in bacteria no 0.58
    4 GFF5261 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) no 0.58
    5 GFF284 putative 2-pyrone-4,6-dicarboxylic acid hydrolase no 0.58
    6 GFF770 Limit dextrin alpha-1,6-maltotetraose-hydrolase (EC 3.2.1.196) no 0.58
    7 GFF4485 FIG00715336: hypothetical protein no 0.55
    8 GFF4264 surface antigen gene no 0.55
    9 GFF6003 no description no 0.54
    10 GFF5487 Thymidine phosphorylase (EC 2.4.2.4) no 0.54
    11 GFF2379 Serine/threonine protein kinase no 0.53
    12 GFF2183 Outer membrane component of TAM transport system no 0.53
    13 GFF3718 Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB (EC 3.5.1.110) no 0.53
    14 GFF2575 Quinolinate synthetase (EC 2.5.1.72) no 0.53
    15 GFF3946 Probable low-affinity inorganic phosphate transporter no 0.53
    16 GFF2151 twitching motility protein PilG no 0.53
    17 GFF4530 MBL-fold metallo-hydrolase superfamily no 0.53
    18 GFF5325 3-dehydroquinate synthase (EC 4.2.3.4) 0.35 0.52
    19 GFF305 uncharacterized domain / RidA/YER057c/UK114 superfamily, group 5 no 0.51
    20 GFF1902 hypothetical protein no 0.51

    Or look for negative cofitness