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  • Top cofit genes for PS417_26100 from Pseudomonas simiae WCS417

    amino acid ABC transporter
    SEED: Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1)
    KEGG: polar amino acid transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_15250 DNA repair protein no 0.24
    2 PS417_28535 TonB-dependent receptor no 0.23
    3 PS417_00185 tryptophan synthase subunit beta 0.11 0.22
    4 PS417_21380 GntR family transcriptional regulator no 0.22
    5 PS417_12565 2-dehydro-3-deoxygluconokinase no 0.22
    6 PS417_08125 prephenate dehydratase no 0.21
    7 PS417_20985 porin no 0.21
    8 PS417_08970 chemotaxis protein no 0.21
    9 PS417_25710 indole-3-glycerol-phosphate synthase no 0.21
    10 PS417_22230 class I peptide chain release factor 0.45 0.21
    11 PS417_20125 phosphoribosylglycinamide formyltransferase no 0.21
    12 PS417_12290 sulfite reductase 0.13 0.21
    13 PS417_18560 N-(5'-phosphoribosyl)anthranilate isomerase 0.10 0.21
    14 PS417_16465 sirohydrochlorin ferrochelatase 0.11 0.21
    15 PS417_24155 ATP-binding protein no 0.20
    16 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase no 0.20
    17 PS417_28385 membrane protein no 0.20
    18 PS417_06970 LysR family transcriptional regulator no 0.20
    19 PS417_01850 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) no 0.20
    20 PS417_18590 SAM-dependent methyltransferase no 0.20

    Or look for negative cofitness