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  • Top cofit genes for PS417_26080 from Pseudomonas simiae WCS417

    TonB-dependent receptor
    SEED: Ferrichrome-iron receptor @ Ferric siderophore receptor, TonB dependent
    KEGG: iron complex outermembrane recepter protein

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_12610 RNA polymerase sigma factor 0.13 0.41
    2 PS417_06365 RNA polymerase sigma factor no 0.40
    3 PS417_13425 cupin no 0.38
    4 PS417_20955 secretion protein no 0.37
    5 PS417_15565 transketolase no 0.37
    6 PS417_24450 membrane protein no 0.37
    7 PS417_03070 LuxR family transcriptional regulator 0.24 0.37
    8 PS417_27505 transcriptional regulator 0.26 0.35
    9 PS417_22710 TonB-dependent receptor 0.30 0.35
    10 PS417_21040 sulfurylase 0.43 0.35
    11 PS417_21945 RNA polymerase subunit sigma-24 no 0.34
    12 PS417_28265 pyridoxamine kinase no 0.34
    13 PS417_24820 ethanolamine ammonia-lyase 0.28 0.34
    14 PS417_22230 class I peptide chain release factor no 0.34
    15 PS417_16070 TonB-dependent receptor no 0.34
    16 PS417_16160 ABC transporter substrate-binding protein no 0.33
    17 PS417_21050 serine acetyltransferase 0.71 0.33
    18 PS417_01355 membrane protein no 0.33
    19 PS417_06460 TonB-dependent receptor no 0.32
    20 PS417_16370 chemotaxis protein CheY no 0.32

    Or look for negative cofitness