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  • Top cofit genes for GFF5090 from Variovorax sp. SCN45

    Homoprotocatechuate degradative operon repressor
    SEED: Homoprotocatechuate degradative operon repressor

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF2132 Thiol:disulfide interchange protein DsbC 0.36 0.55
    2 GFF7104 5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) no 0.53
    3 GFF2614 no description no 0.50
    4 GFF132 ABC transporter, substrate-binding protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.49
    5 GFF1597 Acetolactate synthase large subunit (EC 2.2.1.6) no 0.49
    6 GFF259 Bis-ABC ATPase YheS 0.73 0.48
    7 GFF5169 hypothetical protein no 0.47
    8 GFF2986 Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1) no 0.47
    9 GFF5577 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.46
    10 GFF6746 dolichyl-phosphate-mannose-protein mannosyltransferase family protein no 0.46
    11 GFF6821 ribonuclease H no 0.46
    12 GFF6615 putative plasmid stabilization protein no 0.46
    13 GFF6019 Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) no 0.45
    14 GFF1823 Mg(2+)-transport-ATPase-associated protein MgtC no 0.44
    15 GFF6332 Maltodextrin glucosidase (EC 3.2.1.20) no 0.44
    16 GFF6120 Exonuclease SbcC no 0.44
    17 GFF3566 Transcriptional regulator, LysR family no 0.44
    18 GFF6526 Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11) no 0.44
    19 GFF4619 Altronate dehydratase (EC 4.2.1.7) no 0.44
    20 GFF2473 hypothetical protein no 0.44

    Or look for negative cofitness