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  • Top cofit genes for GFF5087 from Variovorax sp. SCN45

    DNA repair protein RadA
    SEED: DNA repair protein RadA
    KEGG: DNA repair protein RadA/Sms

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF225 Permeases of the major facilitator superfamily no 0.61
    2 GFF2010 Methylglutaconyl-CoA hydratase (EC 4.2.1.18) 0.58 0.56
    3 GFF646 no description no 0.54
    4 GFF6282 23S rRNA (guanine(2445)-N(2))-methyltransferase (EC 2.1.1.173) 0.69 0.54
    5 GFF2139 Ribose ABC transporter, ATP-binding protein RbsA (TC 3.A.1.2.1) 0.29 0.54
    6 GFF1745 Acyl-CoA dehydrogenase no 0.53
    7 GFF2113 NADH dehydrogenase (EC 1.6.99.3) no 0.52
    8 GFF2014 hypothetical protein no 0.51
    9 GFF2786 Sulfate transporter family protein no 0.51
    10 GFF2602 no description no 0.50
    11 GFF5276 D-arabinitol 4-dehydrogenase (EC 1.1.1.11) 0.46 0.50
    12 GFF3338 Threonine efflux protein no 0.49
    13 GFF3053 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) no 0.49
    14 GFF784 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.49
    15 GFF4128 ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) no 0.48
    16 GFF5275 Various polyols ABC transporter, ATP-binding protein no 0.48
    17 GFF1240 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.48
    18 GFF6422 Threonine dehydratase, catabolic (EC 4.3.1.19) @ L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) no 0.48
    19 GFF3037 no description no 0.48
    20 GFF4203 Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative no 0.48

    Or look for negative cofitness