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  • Top cofit genes for GFF5052 from Variovorax sp. SCN45

    FAD-dependent oxidoreductase SPO0682
    SEED: Salicylate hydroxylase (EC 1.14.13.1)
    KEGG: 3-(3-hydroxy-phenyl)propionate hydroxylase

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4886 hypothetical protein no 0.60
    2 GFF1403 MATE efflux family protein no 0.59
    3 GFF1706 ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) / ABC transporter, permease protein (cluster 10, nitrate/sulfonate/bicarbonate) no 0.59
    4 GFF6324 Kup system potassium uptake protein no 0.58
    5 GFF5855 T1SS secreted agglutinin RTX no 0.57
    6 GFF6287 no description no 0.57
    7 GFF5288 Uncharacterized protein PA4513 no 0.56
    8 GFF5259 Na+/solute symporter 0.38 0.56
    9 GFF2521 FIG00931781: hypothetical protein no 0.56
    10 GFF5035 Opine oxidase subunit A no 0.55
    11 GFF5374 Glutamine amidotransferase, class I no 0.55
    12 GFF493 RND efflux system, inner membrane transporter 0.39 0.54
    13 GFF7310 tRNA-(cytosine32)-2-thiocytidine synthetase TtcA no 0.53
    14 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR no 0.53
    15 GFF6522 Zinc-regulated outer membrane receptor no 0.53
    16 GFF3394 Benzoate ABC transporter, ATP-binding protein 1 no 0.52
    17 GFF6456 Lipid A phosphoethanolamine transferase, putative 0.26 0.52
    18 GFF156 Glycosyl transferase, group 2 family no 0.51
    19 GFF6077 G:T/U mismatch-specific uracil/thymine DNA-glycosylase (EC 3.2.2.27) no 0.50
    20 GFF1358 Transcriptional regulator, LysR family no 0.50

    Or look for negative cofitness