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  • Top cofit genes for PS417_02555 from Pseudomonas simiae WCS417

    exoribonuclease R
    SEED: 3'-to-5' exoribonuclease RNase R
    KEGG: ribonuclease R

    Rank Hit Name Description Conserved? Cofitness  
    1 PS417_23900 poly(A) polymerase 0.89 0.58
    2 PS417_28085 phosphate-binding protein 0.64 0.39
    3 PS417_28070 phosphate ABC transporter ATP-binding protein 0.49 0.38
    4 PS417_28080 phosphate ABC transporter permease no 0.38
    5 PS417_28075 phosphate ABC transporter permease 0.54 0.37
    6 PS417_27870 ATP-dependent DNA helicase RecG 0.87 0.34
    7 PS417_02485 tRNA delta(2)-isopentenylpyrophosphate transferase 0.61 0.32
    8 PS417_02255 lipopolysaccharide kinase 0.35 0.32
    9 PS417_02210 diguanylate cyclase no 0.31
    10 PS417_16825 membrane protein 0.26 0.31
    11 PS417_19350 GTP cyclohydrolase no 0.31
    12 PS417_09620 lipopolysaccharide biosynthesis protein 0.32 0.31
    13 PS417_27345 sn-glycerol-3-phosphate transporter no 0.31
    14 PS417_25775 lipoprotein no 0.31
    15 PS417_10645 magnesium ABC transporter ATPase 0.63 0.31
    16 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.90 0.30
    17 PS417_20585 chemotaxis protein no 0.30
    18 PS417_06205 methionine aminopeptidase 0.82 0.30
    19 PS417_25405 catalase 0.42 0.30
    20 PS417_03930 thymidine phosphorylase no 0.29

    Or look for negative cofitness