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  • Top cofit genes for GFF5002 from Variovorax sp. SCN45

    ABC-type branched-chain amino acid transport systems, periplasmic component
    SEED: Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF531 hypothetical protein 0.33 0.69
    2 GFF2354 FIG00555615: hypothetical protein 0.66 0.68
    3 GFF2505 hypothetical protein no 0.64
    4 GFF5408 Protein serine/threonine phosphatase PrpC, regulation of stationary phase 0.46 0.64
    5 GFF5429 Iron(III) dicitrate transport protein FecA no 0.63
    6 GFF2506 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) no 0.63
    7 GFF3906 Acyl-CoA dehydrogenase no 0.63
    8 GFF3247 FIG027190: Putative transmembrane protein 0.38 0.62
    9 GFF6532 Phosphoglucomutase (EC 5.4.2.2) @ Phosphomannomutase (EC 5.4.2.8) no 0.61
    10 GFF5291 Ferrichrome-iron receptor no 0.59
    11 GFF969 ATP-dependent protease HslVU (ClpYQ), peptidase subunit no 0.59
    12 GFF494 RND efflux system, membrane fusion protein no 0.59
    13 GFF5515 Lysophospholipase (EC 3.1.1.5) no 0.59
    14 GFF544 Isoleucyl-tRNA synthetase (EC 6.1.1.5) no 0.58
    15 GFF5433 Oxidoreductase, short-chain dehydrogenase/reductase family no 0.58
    16 GFF375 hypothetical protein no 0.57
    17 GFF3893 hypothetical protein no 0.57
    18 GFF2830 Uncharacterized protein CC_3061 no 0.56
    19 GFF4408 3-methylmercaptopropionyl-CoA ligase (EC 6.2.1.44) of DmdB2 type no 0.56
    20 GFF5329 SAM-dependent methyltransferase no 0.55

    Or look for negative cofitness