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  • Top cofit genes for GFF4989 from Variovorax sp. SCN45

    Transcriptional regulator, LysR family
    SEED: LysR-family transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF768 Trehalose synthase (EC 5.4.99.16) no 0.61
    2 GFF452 Chloride channel protein no 0.60
    3 GFF3262 Polymer-forming bactofilin no 0.58
    4 GFF2056 Septum-associated rare lipoprotein A no 0.58
    5 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) 0.65 0.58
    6 GFF4522 Uncharacterized MFS-type transporter no 0.57
    7 GFF1096 Phosphate transport system regulatory protein PhoU 0.77 0.57
    8 GFF362 Enoyl-CoA hydratase (EC 4.2.1.17) no 0.56
    9 GFF2027 2-hydroxychromene-2-carboxylate isomerase family protein no 0.56
    10 GFF6182 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) 0.47 0.55
    11 GFF5896 Anthranilate synthase, aminase component (EC 4.1.3.27) no 0.54
    12 GFF4270 Transcriptional regulator, AcrR family no 0.53
    13 GFF2634 FIG00464095: hypothetical protein no 0.53
    14 GFF808 Polyhydroxyalkanoic acid synthase no 0.53
    15 GFF1941 hypothetical protein no 0.52
    16 GFF4530 MBL-fold metallo-hydrolase superfamily 0.54 0.52
    17 GFF2322 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) no 0.52
    18 GFF6097 1,2-phenylacetyl-CoA epoxidase, subunit E (EC 1.14.13.149) no 0.51
    19 GFF2627 Chorismate synthase (EC 4.2.3.5) 0.66 0.51
    20 GFF5118 gluconolactonase family protein no 0.50

    Or look for negative cofitness