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  • Top cofit genes for GFF4959 from Variovorax sp. SCN45

    ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate)
    SEED: Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)
    KEGG: branched-chain amino acid transport system permease protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF690 Transcriptional regulator, IclR family no 0.58
    2 GFF7357 Phenylacetate ABC transporter, ATP-binding protein 1 no 0.57
    3 GFF6774 ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) no 0.54
    4 GFF3610 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.53
    5 GFF3704 FIG00536957: hypothetical protein no 0.52
    6 GFF6831 hypothetical protein no 0.52
    7 GFF5292 no description no 0.51
    8 GFF1133 FIG00431745: hypothetical protein no 0.51
    9 GFF4662 no description no 0.51
    10 GFF3241 hypothetical protein no 0.50
    11 GFF3146 no description no 0.50
    12 GFF6609 FIG00957806: hypothetical protein no 0.49
    13 GFF3724 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.49
    14 GFF1037 putative membrane protein no 0.48
    15 GFF2365 Altronate dehydratase (EC 4.2.1.7) no 0.48
    16 GFF2086 hypothetical protein no 0.48
    17 GFF2249 no description no 0.48
    18 GFF958 ElaB protein no 0.48
    19 GFF1166 Murein-DD-endopeptidase (EC 3.4.99.-) no 0.48
    20 GFF5265 Outer membrane lipoprotein no 0.48

    Or look for negative cofitness