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Cofit
Protein
Homologs
Top cofit genes for GFF4939 from
Variovorax sp. SCN45
hypothetical protein
KEGG: transcriptional regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
GFF1327
Cell division protein BolA
no
0.53
2
GFF1401
Beta-lactamase class C-like and penicillin binding proteins (PBPs) superfamily
no
0.53
3
GFF2813
LSU ribosomal protein L9p
no
0.51
4
GFF7221
Protein lysine acetyltransferase Pat (EC 2.3.1.-)
no
0.51
5
GFF5652
FIG00014764: hypothetical protein
no
0.51
6
GFF4849
Conjugative transfer protein TrbB
no
0.50
7
GFF428
Efflux transport system, outer membrane factor (OMF) lipoprotein
no
0.50
8
GFF4856
3-methylmercaptopropionyl-CoA dehydrogenase (DmdC)
no
0.50
9
GFF6928
Putative transmembrane protein
no
0.49
10
GFF3986
Oxidoreductase, short-chain dehydrogenase/reductase family
no
0.49
11
GFF7093
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
no
0.49
12
GFF4958
ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate)
no
0.48
13
GFF782
Alpha-ketoglutarate-dependent dioxygenase AlkB (EC 1.14.11.33)
no
0.48
14
GFF4679
Inositol-1-monophosphatase (EC 3.1.3.25)
no
0.48
15
GFF1640
Polyketide synthase modules and related proteins
no
0.47
16
GFF3169
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
no
0.47
17
GFF4890
hypothetical protein
no
0.46
18
GFF6799
ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines)
no
0.46
19
GFF1995
Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1)
no
0.46
20
GFF7094
5-carboxymethyl-2-oxo-hex-3- ene-1,7-dioate decarboxylase (EC 4.1.1.68) / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase (EC 5.3.3.-)
no
0.46
Or look for
negative cofitness