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  • Top cofit genes for GFF4936 from Variovorax sp. SCN45

    ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines)
    SEED: Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
    KEGG: peptide/nickel transport system substrate-binding protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF3376 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.55
    2 GFF3199 Ser/Thr protein phosphatase family protein no 0.54
    3 GFF680 RecA/RadA recombinase no 0.53
    4 GFF149 Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form (EC 2.3.1.164) no 0.53
    5 GFF3440 FIG00460300: hypothetical protein no 0.52
    6 GFF722 hypothetical protein no 0.52
    7 GFF1577 hypothetical protein no 0.52
    8 GFF4800 DNA mismatch repair protein MutL no 0.52
    9 GFF2400 no description no 0.51
    10 GFF3559 no description no 0.51
    11 GFF5423 FIG00537205: hypothetical protein no 0.51
    12 GFF1489 Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like no 0.51
    13 GFF6825 CaiB/BaiF family protein no 0.51
    14 GFF4064 no description no 0.51
    15 GFF2022 Acyl-CoA dehydrogenase no 0.50
    16 GFF730 Class A beta-lactamase (EC 3.5.2.6) no 0.50
    17 GFF2612 no description no 0.50
    18 GFF2636 hypothetical protein no 0.49
    19 GFF1016 no description no 0.49
    20 GFF1748 Outer membrane lipoprotein no 0.49

    Or look for negative cofitness