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  • Top cofit genes for GFF493 from Variovorax sp. SCN45

    RND efflux system, inner membrane transporter
    SEED: Probable transmembrane drug efflux protein

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5429 Iron(III) dicitrate transport protein FecA 0.53 0.64
    2 GFF1828 phosphodiesterase I no 0.59
    3 GFF2506 Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-) 0.44 0.59
    4 GFF531 hypothetical protein no 0.56
    5 GFF5408 Protein serine/threonine phosphatase PrpC, regulation of stationary phase no 0.56
    6 GFF5052 FAD-dependent oxidoreductase SPO0682 0.39 0.54
    7 GFF5736 Flagellar hook-associated protein FlgL no 0.54
    8 GFF2830 Uncharacterized protein CC_3061 no 0.54
    9 GFF375 hypothetical protein 0.46 0.53
    10 GFF6392 hypothetical protein no 0.53
    11 GFF2775 Lignostilbene-alpha,beta-dioxygenase and related enzymes no 0.52
    12 GFF5855 T1SS secreted agglutinin RTX no 0.52
    13 GFF266 RND efflux system, inner membrane transporter no 0.52
    14 GFF3911 Putative phosphoesterase no 0.52
    15 GFF5035 Opine oxidase subunit A no 0.52
    16 GFF4737 Nitrate ABC transporter, substrate-binding protein 0.72 0.51
    17 GFF2505 hypothetical protein no 0.51
    18 GFF248 Cell division protein FtsH (EC 3.4.24.-) no 0.50
    19 GFF6687 hypothetical protein no 0.50
    20 GFF3931 Protein sirB1 no 0.49

    Or look for negative cofitness