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  • Top cofit genes for GFF4869 from Variovorax sp. SCN45

    Type IV secretory pathway, protease TraF
    SEED: Type IV secretory pathway, protease TraF

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF5055 BUG/TctC family periplasmic protein no 0.55
    2 GFF3410 Transcriptional regulator, AraC family no 0.54
    3 GFF3258 hypothetical protein no 0.54
    4 GFF4401 no description no 0.53
    5 GFF7411 no description no 0.52
    6 GFF1464 hypothetical protein no 0.51
    7 GFF2792 Chaperone protein ClpB (ATP-dependent unfoldase) no 0.50
    8 GFF2954 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44) no 0.50
    9 GFF3081 no description no 0.50
    10 GFF1029 CHRD domain containing protein no 0.49
    11 GFF1272 no description no 0.49
    12 GFF5648 ABC transporter, substrate-binding protein (cluster 12, methionine/phosphonates) no 0.48
    13 GFF4000 ATP-dependent DNA helicase UvrD/PcrA (EC 3.6.4.12) no 0.48
    14 GFF3053 Allophanate hydrolase 2 subunit 1 (EC 3.5.1.54) no 0.48
    15 GFF6963 Cytochrome c oxidase (cbb3-type) subunit CcoO (EC 1.9.3.1) 0.29 0.48
    16 GFF3324 hypothetical protein no 0.48
    17 GFF1030 Ferredoxin reductase no 0.48
    18 GFF3111 hypothetical protein no 0.47
    19 GFF6186 no description no 0.47
    20 GFF1342 Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3) no 0.47

    Or look for negative cofitness