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  • Top cofit genes for GFF4865 from Hydrogenophaga sp. GW460-11-11-14-LB1

    Type IV pilus biogenesis protein PilF
    SEED: Type IV pilus biogenesis protein PilF
    KEGG: type IV pilus assembly protein PilF

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF4346 GTP-binding protein TypA/BipA no 0.71
    2 GFF4495 transcriptional regulator, Crp/Fnr family no 0.71
    3 GFF4214 Oligopeptidase A (EC 3.4.24.70) no 0.69
    4 GFF2572 Uncharacterized protein with LysM domain, COG1652 0.99 0.68
    5 GFF340 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) no 0.68
    6 GFF2123 Translation initiation factor 1 no 0.66
    7 GFF229 Rrf2 family transcriptional regulator, group III no 0.66
    8 GFF4191 Uncharacterized protein conserved in bacteria no 0.65
    9 GFF1055 hypothetical protein no 0.65
    10 GFF3343 Translation elongation factor LepA 0.51 0.65
    11 GFF4258 FIG005121: SAM-dependent methyltransferase (EC 2.1.1.-) no 0.65
    12 GFF737 Autolysin sensor kinase (EC 2.7.3.-) 0.96 0.65
    13 GFF4769 FIG070318: hypothetical protein no 0.64
    14 GFF2016 Threonine efflux protein no 0.64
    15 GFF630 GTP-binding and nucleic acid-binding protein YchF no 0.64
    16 GFF4665 Putative deoxyribonuclease YcfH no 0.64
    17 GFF5352 TRAP transporter solute receptor, unknown substrate 5 0.65 0.64
    18 GFF2232 FIG00571894: hypothetical protein no 0.63
    19 GFF4267 Pyrophosphate-energized proton pump (EC 3.6.1.1) no 0.63
    20 GFF4596 Stress responsive alpha-beta barrel domain protein Dabb no 0.63

    Or look for negative cofitness