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  • Top cofit genes for GFF4849 from Variovorax sp. SCN45

    Conjugative transfer protein TrbB
    SEED: Conjugative transfer protein TrbB
    KEGG: type IV secretion system protein VirB11

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6207 Allantoin racemase (EC 5.1.99.3) no 0.65
    2 GFF1947 no description no 0.61
    3 GFF99 KEGG: RNA polymerase sigma-70 factor, ECF subfamily no 0.60
    4 GFF40 no description no 0.58
    5 GFF7210 Hydroxymethylpyrimidine ABC transporter, transmembrane component no 0.55
    6 GFF428 Efflux transport system, outer membrane factor (OMF) lipoprotein no 0.54
    7 GFF2225 ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.53
    8 GFF972 no description no 0.53
    9 GFF7164 hypothetical protein no 0.51
    10 GFF4156 ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) no 0.51
    11 GFF6763 uncharacterized domain 1 no 0.51
    12 GFF1212 Oligopeptide transport permease protein OppC-like @ Glutathione ABC transporter, permease protein GsiD no 0.51
    13 GFF4940 FIG033889: YebC paralog in Betaproteobacteria no 0.51
    14 GFF3997 Short-chain dehydrogenase/reductase SDR no 0.50
    15 GFF3393 Benzoate ABC transporter, ATP-binding protein 2 no 0.50
    16 GFF1186 Ferrichrome-iron receptor no 0.50
    17 GFF4939 hypothetical protein no 0.50
    18 GFF5475 Uncharacterized MFS-type transporter no 0.50
    19 GFF2235 hypothetical protein no 0.50
    20 GFF2483 Urease alpha subunit (EC 3.5.1.5) no 0.49

    Or look for negative cofitness