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  • Top cofit genes for GFF4845 from Variovorax sp. SCN45

    Conjugative transfer protein TrbJ
    SEED: Conjugative transfer protein TrbJ

    Rank Hit Name Description Conserved? Cofitness  
    1 GFF6990 hypothetical protein no 0.58
    2 GFF4347 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) no 0.57
    3 GFF4992 Transcriptional regulator, AcrR family no 0.55
    4 GFF1841 Xanthine dehydrogenase, molybdenum binding subunit (EC 1.17.1.4) no 0.54
    5 GFF5721 Flagellar L-ring protein FlgH no 0.52
    6 GFF216 Transmembrane regulator protein PrtR no 0.50
    7 GFF4945 probable GntR-family transcriptional regulator no 0.50
    8 GFF924 hypothetical protein no 0.50
    9 GFF1572 Transcriptional regulator, LysR family no 0.50
    10 GFF2072 Phosphate starvation-inducible protein PhoH, predicted ATPase no 0.50
    11 GFF47 DNA double-strand break repair Rad50 ATPase no 0.50
    12 GFF5039 no description no 0.49
    13 GFF3701 FIG004694: Hypothetical protein no 0.48
    14 GFF2487 Two-component system sensor histidine kinase/response regulator hybrid no 0.48
    15 GFF7016 FAD-dependent oxidoreductase no 0.48
    16 GFF4043 Copper sensory histidine kinase CusS no 0.47
    17 GFF6087 Transcriptional regulator, AcrR family no 0.47
    18 GFF4991 Polyhydroxyalkanoate granule-associated protein PhaF no 0.47
    19 GFF2680 Protein of unknown function DUF1058 no 0.47
    20 GFF124 Beta-ureidopropionase (EC 3.5.1.6) no 0.47

    Or look for negative cofitness